I have been scouring the web for more info. Can't find anything about squirrels having Nictitating Membranes, and most mentions of squirrels having cloudy eyes seem to be about nutrition and hydration. I have not been able to find a vet anywhere near me that will see a squirrel, but I haven't called all of them yet. I'm going to just keep giving her a healthy diet and maybe I'll pick up some Pedialyte and put a bowl of that in there too. Most of the threads and articles I've read say that it can heal with time. The waiting is hard, though. I'm very worried about her vision, but at least her energy level has improved. Not 100% but probably 80%, and that might just be because she can't see where she's going.
Thanks for everyone's help!
Rabs